When the Go-Busters are defeated by a new threat sent by Messiah, Nick and J make a wish for God to to make it so Messiah existed which lands them in an alternate timeline where the Go-Busters go through a series of battles much different from the ones in the original timeline, but are still somehow very familiar. However, the two quickly realize the enemy that defeated their team mates in the original timeline will still exist here and it falls to them to figure out a way to stop him.